STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacC_2D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family. (376 aa)    
Predicted Functional Partners:
dacB_3
D-alanyl-D-alanine carboxypeptidase DacB.
     
 0.917
mrcA
Penicillin-binding protein 1A.
     
 0.913
dacD
D-alanyl-D-alanine carboxypeptidase DacD; Belongs to the peptidase S11 family.
  
  
 
0.905
dacA_2
D-alanyl-D-alanine carboxypeptidase DacA.
  
  
 
0.902
ftsI_4
Peptidoglycan synthase FtsI.
  
 
 0.615
ftsI_1
Peptidoglycan synthase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
  
 
 0.589
mrcB_1
Penicillin-binding protein 1B.
  
 
 0.574
pbpD
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
 
 0.564
AML36186.1
Putative L,D-transpeptidase YcbB.
   
 
 0.550
ldcA
Murein tetrapeptide carboxypeptidase.
    
 0.543
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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