STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiSPutative L,D-transpeptidase YbiS. (304 aa)    
Predicted Functional Partners:
dacB_3
D-alanyl-D-alanine carboxypeptidase DacB.
  
  
 0.627
AML36186.1
Putative L,D-transpeptidase YcbB.
 
  
 0.609
dacD
D-alanyl-D-alanine carboxypeptidase DacD; Belongs to the peptidase S11 family.
    
 0.526
dacC_2
D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.
    
 0.526
dacA_2
D-alanyl-D-alanine carboxypeptidase DacA.
    
 0.526
AML36298.1
Putative tyrosine-protein phosphatase.
       0.444
mrcB_1
Penicillin-binding protein 1B.
  
   
 0.433
pssA
CDP-diacylglycerol--serine O-phosphatidyltransferase.
  
     0.429
AML36185.1
Hypothetical protein.
 
     0.414
spy
Spheroplast protein Y.
  
    0.407
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.