STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhR_2Inner membrane transport permease YbhR. (368 aa)    
Predicted Functional Partners:
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
  
 0.992
macA_3
UPF0194 membrane protein.
  
 0.946
ybhS
Inner membrane transport permease YbhS.
 
 
 
0.817
AML36323.1
Putative HTH-type transcriptional regulator YbiH.
  
 0.813
macA_4
Hypothetical protein.
  
 0.747
drrA
Putative ABC transporter ATP-binding protein YadG.
 
  
 0.693
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
   
 0.661
ybhF_3
Putative ABC transporter ATP-binding protein YhiH.
 
 
0.658
yhhJ
Inner membrane transport permease YhhJ.
 
  
 
0.562
potG_1
Putrescine transport ATP-binding protein PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
   
  0.478
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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