STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
basR_3Transcriptional regulatory protein BasR. (223 aa)    
Predicted Functional Partners:
basS_1
Sensor protein BasS.
 0.998
arcB_1
Aerobic respiration control sensor protein ArcB.
 
 0.961
AML34510.1
Signal transduction protein PmrD.
     
  0.900
barA
Signal transduction histidine-protein kinase BarA.
 
 
 0.875
eptA
Phosphoethanolamine transferase EptA.
 
  
 0.874
qseC
Sensor protein QseC.
 
 0.852
cusS_3
Sensor kinase CusS; Member of a two-component regulatory system.
 
 0.804
cpxA
Sensor protein CpxA.
 
 0.775
AML35265.1
Sensor protein CpxA.
 
 
 0.766
AML34090.1
Sensor protein QseC.
 
 0.755
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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