STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stp_3Putative actinorhodin transporter. (475 aa)    
Predicted Functional Partners:
AML36550.1
Hypothetical protein.
 
     0.725
yibH_2
Multidrug export protein EmrA.
 
 
 0.633
mscM_2
Miniconductance mechanosensitive channel YbdG.
       0.583
bcr_2
Bicyclomycin resistance protein.
  
   
 0.534
yibH_4
Putative multidrug resistance protein EmrK.
 
 
 0.515
AML36549.1
Hypothetical protein.
       0.506
ydhC
Inner membrane transport protein YdhC.
  
   
 0.479
AML34756.1
Putative transporter.
  
   
 0.462
yiaV_2
Multidrug resistance protein MdtN.
  
   0.441
AML38533.1
Hypothetical protein.
  
     0.413
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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