STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadALysine decarboxylase, inducible. (715 aa)    
Predicted Functional Partners:
patA_2
Putrescine aminotransferase.
   
 
 0.907
ldcC
Lysine decarboxylase, constitutive.
  
  
 
0.901
adiC
Putative cadaverine/lysine antiporter.
 
  
 0.838
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.827
AML38722.1
Putrescine-ornithine antiporter.
 
  
 0.685
yjdL
Putative dipeptide and tripeptide permease YjdL.
  
    0.605
ravA
ATPase RavA.
   
 
 0.588
AML34024.1
Hypothetical protein.
  
     0.466
cadC
Transcriptional activator CadC.
 
     0.445
AML38708.1
Arginine/agmatine antiporter.
 
  
 0.421
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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