Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yacHHypothetical protein. (546 aa)    
Predicted Functional Partners:
AML36957.1
Hypothetical protein.
 
  
 0.960
AML37088.1
Chitinase A1.
 
  
 0.636
AML36510.1
Chitinase A1.
 
  
 0.632
AML37504.1
Hypothetical protein.
 
  
 0.615
ybhC_2
Putative acyl-CoA thioester hydrolase YbhC.
  
   
 0.611
ftsK
DNA translocase FtsK.
   
 
 0.596
AML36955.1
Hypothetical protein.
       0.572
AML37040.1
Hypothetical protein.
  
     0.546
AML35688.1
Neutral endopeptidase.
  
    0.505
AML37627.1
Vitamin B12 transporter BtuB.
    
   0.499
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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