STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribFRiboflavin biosynthesis protein RibF; Belongs to the ribF family. (295 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 0.960
ribE
Riboflavin synthase.
  
 
 0.942
ssuE
FMN reductase (NADPH).
    
 0.913
ybjI
Flavin mononucleotide phosphatase YbjI.
   
 0.913
yfnB
Flavin mononucleotide phosphatase YigB.
  
 
 0.913
fre
NAD(P)H-flavin reductase.
    
  0.911
hpaC
4-hydroxyphenylacetate 3-monooxygenase reductase component.
    
  0.903
phoC
Non-specific acid phosphatase.
    
  0.900
aphA
Class B acid phosphatase; Belongs to the class B bacterial acid phosphatase family.
     
  0.900
AML38691.1
Class B acid phosphatase.
     
  0.900
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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