Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AML37079.1Putative fimbrial-like protein YcbV. (172 aa)    
Predicted Functional Partners:
AML37083.1
Chaperone protein FimC.
 
 
 0.960
AML37082.1
Putative outer membrane usher protein ElfC.
 
 
 0.959
AML37078.1
Putative fimbrial chaperone YcbF.
 
   0.929
AML37513.1
Chaperone protein FimC.
 
 
 0.858
AML38748.1
Putative fimbrial chaperone YehC.
 
 
 0.835
fimD_8
Outer membrane usher protein LpfC.
 
 
 0.833
AML38749.1
Putative outer membrane usher protein YehB.
 
 
 0.831
AML36813.1
Chaperone protein EcpD.
 
 
 0.830
fimD_2
Outer membrane usher protein FimD.
 
 
 0.830
AML36814.1
Outer membrane usher protein FimD.
 
 
 0.828
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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