Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
sltSoluble lytic murein transglycosylase. (645 aa)    
Predicted Functional Partners:
AML34291.1
Protein AsmA.
  
  
 0.814
mltD
Membrane-bound lytic murein transglycosylase D.
 
  
 0.756
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
 
     0.729
rcsD_1
Sensor-like histidine kinase RcsD.
  
     0.723
AML38304.1
Cell shape-determining protein MreC.
 
   
 0.697
ydgA
Protein YdgA.
  
     0.693
AML35060.1
Hypothetical protein.
  
     0.686
ompF
Outer membrane protein F.
  
     0.670
phoE
Outer membrane pore protein E; Belongs to the Gram-negative porin family.
  
     0.659
ompN_1
Outer membrane protein S1; Belongs to the Gram-negative porin family.
  
     0.644
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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