Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tdcFRutC family protein. (130 aa)    
Predicted Functional Partners:
dan
D-aminoacylase.
   
 0.973
AML37161.1
D-threonine aldolase.
 
   
 0.871
AML37343.1
Enamine/imine deaminase.
  
     0.773
aphA
Class B acid phosphatase; Belongs to the class B bacterial acid phosphatase family.
      
 0.693
AML38691.1
Class B acid phosphatase.
      
 0.693
ghrB
Glyoxylate/hydroxypyruvate reductase B; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GhrB subfamily.
   
  
 0.647
AML37475.1
Protein StbB.
      
 0.630
sglT
Low affinity sodium-glucose cotransporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.610
amnD
RutC family protein.
 
   
 0.593
osmC_2
Peroxiredoxin OsmC.
     
 0.563
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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