Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
danD-aminoacylase. (479 aa)    
Predicted Functional Partners:
tdcF
RutC family protein.
   
 0.973
AML37161.1
D-threonine aldolase.
 
   
 0.946
sglT
Low affinity sodium-glucose cotransporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.773
AML37344.1
Beta-hexosaminidase.
   
 0.753
dgoA_2
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
     0.558
AML37352.1
Putative HTH-type transcriptional regulator.
 
   
 0.551
ydjH_2
2-dehydro-3-deoxygluconokinase.
    
 0.509
ybbH_4
HTH-type transcriptional regulator HexR.
 
   
 0.499
AML37157.1
2-dehydro-3-deoxygalactonokinase.
       0.484
dacB_3
D-alanyl-D-alanine carboxypeptidase DacB.
      0.470
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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