STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
danD-aminoacylase. (479 aa)    
Predicted Functional Partners:
tdcF
RutC family protein.
   
 0.969
AML37161.1
D-threonine aldolase.
 
   
 0.914
sglT
Low affinity sodium-glucose cotransporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.768
AML37344.1
Beta-hexosaminidase.
     0.750
dgoA_2
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
     0.560
AML37352.1
Putative HTH-type transcriptional regulator.
 
     0.510
AML37157.1
2-dehydro-3-deoxygalactonokinase.
       0.487
dacB_3
D-alanyl-D-alanine carboxypeptidase DacB.
      0.472
AML34775.1
Putative type VI secretion system protein VgrGB.
      
 0.463
AML34797.1
Putative type VI secretion system protein VgrGA.
      
 0.463
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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