STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treRHTH-type transcriptional regulator TreR. (315 aa)    
Predicted Functional Partners:
treB
PTS system trehalose-specific EIIBC component.
   
 0.877
AML35360.1
HTH-type transcriptional regulator GalR.
  
     0.774
AML35224.1
Ribose operon repressor.
  
     0.773
AML38072.1
Putative HTH-type transcriptional repressor ExuR.
  
     0.773
ccpA_3
Putative HTH-type transcriptional regulator in aml 5'region.
  
     0.744
treA_2
Trehalose-6-phosphate hydrolase.
 
  
 0.653
gltB
Glutamate synthase [NADPH] large chain.
    
 
 0.610
dhaM
PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM; Belongs to the PEP-utilizing enzyme family.
 
 
 
 0.588
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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