STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ravAATPase RavA. (499 aa)    
Predicted Functional Partners:
viaA_1
Protein ViaA.
  
 0.995
AML38232.1
Hypothetical protein.
  
   
 0.603
cadA
Lysine decarboxylase, inducible.
   
 
 0.588
ldcC
Lysine decarboxylase, constitutive.
   
 
 0.588
AML36843.1
UPF0255 protein; Belongs to the UPF0255 family.
  
     0.524
arcA
Aerobic respiration control protein ArcA.
      
 0.495
yccJ
Hypothetical protein.
      
 0.491
yaeP
UPF0253 protein; Belongs to the UPF0253 family.
      
 0.491
AML38473.1
Hypothetical protein.
 
  
 0.489
trkD
Low affinity potassium transport system protein kup; Responsible for the low-affinity transport of potassium into the cell, with the probable concomitant uptake of protons (symport system); Belongs to the HAK/KUP transporter (TC 2.A.72) family.
       0.481
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.