STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdC_1Xylose operon regulatory protein. (392 aa)    
Predicted Functional Partners:
dhaM
PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM; Belongs to the PEP-utilizing enzyme family.
   
 
 0.699
malS_2
Alpha-amylase.
 
  
 0.680
avtA
Valine--pyruvate aminotransferase.
 
      0.661
gltB
Glutamate synthase [NADPH] large chain.
   
 
 0.629
xylH_1
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.624
metJ
Met repressor; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis.
  
   
 0.619
xylF_1
D-xylose-binding periplasmic protein.
 
   
 0.612
rpoA_2
DNA-directed RNA polymerase subunit alpha.
   
 
 0.609
xylA_4
Xylose isomerase; Belongs to the xylose isomerase family.
 
   
 0.573
araC_2
Arabinose operon regulatory protein.
  
     0.560
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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