Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AML38199.1Putative DNA utilization protein HofN. (179 aa)    
Predicted Functional Partners:
AML38198.1
Putative DNA utilization protein HofM.
  
 
 0.989
pilQ
Putative DNA transport protein HofQ.
  
 
 0.957
AML38200.1
Putative DNA utilization protein HofO.
       0.822
epsE_2
Protein transport protein HofB like.
  
 
 0.817
AML36972.1
Protein transport protein HofC like.
   
 
 0.704
yggR
Hypothetical protein.
  
  
 0.573
AML38242.1
Leader peptidase HopD.
  
  
 0.565
AML36198.1
Hypothetical protein.
      
 0.562
mrcA
Penicillin-binding protein 1A.
     
 0.496
gltB
Glutamate synthase [NADPH] large chain.
       0.421
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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