Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilQPutative DNA transport protein HofQ. (413 aa)    
Predicted Functional Partners:
AML38199.1
Putative DNA utilization protein HofN.
  
 
 0.957
AML36972.1
Protein transport protein HofC like.
 
 
 
 0.920
epsE_2
Protein transport protein HofB like.
 
 
 
 0.903
yggR
Hypothetical protein.
 
   
 0.884
AML38198.1
Putative DNA utilization protein HofM.
  
 
 0.871
AML38242.1
Leader peptidase HopD.
 
  
 0.833
ygaU
Hypothetical protein.
   
 
 0.801
pilE
Prepilin peptidase-dependent protein D.
 
   
 0.760
aroK
Shikimate kinase 1; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
 0.760
matB
Fimbrillin MatB like.
      
 0.692
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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