arfA protein (Klebsiella aerogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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Assay-based Predictions

experimentally determined

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Genomic Predictions

gene neighborhood

gene co-occurrence

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Your Current Organism:

Klebsiella aerogenes

NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AML38265.1	AML38266.1	EAG7_04533	EAG7_04534	30S ribosomal protein S13.	30S ribosomal protein S11.	0.999
AML38265.1	arfA	EAG7_04533	EAG7_04540	30S ribosomal protein S13.	Alternative ribosome-rescue factor A.	0.951
AML38265.1	prfB	EAG7_04533	EAG7_04933	30S ribosomal protein S13.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.914
AML38265.1	rplO	EAG7_04533	EAG7_04531	30S ribosomal protein S13.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
AML38265.1	rplQ	EAG7_04533	EAG7_04537	30S ribosomal protein S13.	50S ribosomal protein L17.	0.999
AML38265.1	rplR	EAG7_04533	EAG7_04528	30S ribosomal protein S13.	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
AML38265.1	rplX	EAG7_04533	EAG7_04523	30S ribosomal protein S13.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.998
AML38265.1	rpmI	EAG7_04533	EAG7_02022	30S ribosomal protein S13.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.993
AML38265.1	rpsD	EAG7_04533	EAG7_04535	30S ribosomal protein S13.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
AML38265.1	rpsH	EAG7_04533	EAG7_04526	30S ribosomal protein S13.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.999
AML38266.1	AML38265.1	EAG7_04534	EAG7_04533	30S ribosomal protein S11.	30S ribosomal protein S13.	0.999
AML38266.1	arfA	EAG7_04534	EAG7_04540	30S ribosomal protein S11.	Alternative ribosome-rescue factor A.	0.951
AML38266.1	prfB	EAG7_04534	EAG7_04933	30S ribosomal protein S11.	Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.	0.949
AML38266.1	rplO	EAG7_04534	EAG7_04531	30S ribosomal protein S11.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
AML38266.1	rplQ	EAG7_04534	EAG7_04537	30S ribosomal protein S11.	50S ribosomal protein L17.	0.999
AML38266.1	rplR	EAG7_04534	EAG7_04528	30S ribosomal protein S11.	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
AML38266.1	rplX	EAG7_04534	EAG7_04523	30S ribosomal protein S11.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.998
AML38266.1	rpmI	EAG7_04534	EAG7_02022	30S ribosomal protein S11.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.991
AML38266.1	rpsD	EAG7_04534	EAG7_04535	30S ribosomal protein S11.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
AML38266.1	rpsH	EAG7_04534	EAG7_04526	30S ribosomal protein S11.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.999

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