Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csrD_2RNase E specificity factor CsrD. (646 aa)    
Predicted Functional Partners:
barA
Signal transduction histidine-protein kinase BarA.
 
  
 0.935
arcB_1
Aerobic respiration control sensor protein ArcB.
  
 
 0.927
yhjK
Protein YhjK.
 
  
 0.895
AML34805.1
Putative signaling protein.
 
 
 0.875
AML34895.1
Hypothetical protein.
 
  
 0.867
AML36816.1
Cyclic di-GMP phosphodiesterase YhjH.
  
  
 0.825
AML34724.1
Putative cyclic-di-GMP phosphodiesterase AdrB.
  
  
 0.815
AML35460.1
Putative diguanylate cyclase YeaP.
 
  
 0.810
ycgG_3
Protein Rtn.
  
  
 0.809
AML34894.1
Hypothetical protein.
  
  
 0.804
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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