STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiDHypothetical protein. (264 aa)    
Predicted Functional Partners:
yhhW_1
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.671
yhhW_2
Putative quercetin 2,3-dioxygenase; Belongs to the pirin family.
 
  
 0.663
ydcO
Inner membrane protein YdcO.
      
 0.593
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
     
 0.551
hpcD
5-carboxymethyl-2-hydroxymuconate Delta-isomerase.
  
  
 0.547
yhaK
Pirin-like protein YhaK; Belongs to the pirin family.
 
  
 0.537
mhpD
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
  
  
 0.525
catC
Muconolactone Delta-isomerase.
      
 0.481
catB
Muconate cycloisomerase 1; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
      
 0.461
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.424
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.