STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AML38969.1D-alanyl-D-alanine dipeptidase. (193 aa)    
Predicted Functional Partners:
AML38968.1
Putative D,D-dipeptide-binding periplasmic protein DdpA.
 
    0.967
AML38970.1
Putative HTH-type transcriptional regulator in aarA 3'region.
 
     0.823
AML38965.1
Putative D,D-dipeptide transport ATP-binding protein DdpD.
  
    0.705
AML38966.1
Putative D,D-dipeptide transport system permease protein DdpC.
 
    0.656
AML38964.1
Putative D,D-dipeptide transport ATP-binding protein DdpF.
  
    0.631
AML38967.1
Putative D,D-dipeptide transport system permease protein DdpB.
       0.605
AML34572.1
Hypothetical protein.
  
     0.428
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
      0.427
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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