Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
spaGSurface-anchored fimbrial subunit; Predicted outer membrane protein. (1428 aa)    
Predicted Functional Partners:
spaH
Surface-anchored fimbrial subunit; Predicted outer membrane protein.
 
   
 0.935
srtD
Putative fimbrial associated sortase-like protein; Sortase (surface protein transpeptidase).
 
   
 0.931
srtE
Putative fimbrial associated sortase-like protein; Sortase (surface protein transpeptidase).
 
   
 0.916
spaI
Surface-anchored fimbrial subunit; Superfamily II DNA and RNA helicases.
     
 0.732
srtB
Sortase (surface protein transpeptidase).
     
 0.634
aap
Putative surface protein; DNA-directed RNA polymerase, beta subunit/140 kD subunit.
      
 0.539
ACP33172.1
Predicted membrane protein.
  
     0.481
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.438
lysC
Aspartokinases; Belongs to the aspartokinase family.
       0.409
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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