STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
srtDPutative fimbrial associated sortase-like protein; Sortase (surface protein transpeptidase). (328 aa)    
Predicted Functional Partners:
spaH
Surface-anchored fimbrial subunit; Predicted outer membrane protein.
 
   
 0.956
spaG
Surface-anchored fimbrial subunit; Predicted outer membrane protein.
 
   
 0.931
srtE
Putative fimbrial associated sortase-like protein; Sortase (surface protein transpeptidase).
 
   
0.831
spaI
Surface-anchored fimbrial subunit; Superfamily II DNA and RNA helicases.
     
 0.831
srtB
Sortase (surface protein transpeptidase).
  
   
 0.676
ACP33842.1
Putative membrane protein.
  
     0.416
ACP31770.1
Transposase and inactivated derivatives.
  
     0.413
ACP32838.1
Transposase and inactivated derivatives.
  
     0.413
ACP33660.1
Transposase and inactivated derivatives.
  
     0.413
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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