STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srtEPutative fimbrial associated sortase-like protein; Sortase (surface protein transpeptidase). (307 aa)    
Predicted Functional Partners:
spaH
Surface-anchored fimbrial subunit; Predicted outer membrane protein.
 
   
 0.908
spaG
Surface-anchored fimbrial subunit; Predicted outer membrane protein.
 
   
 0.841
srtD
Putative fimbrial associated sortase-like protein; Sortase (surface protein transpeptidase).
 
   
0.823
spaI
Surface-anchored fimbrial subunit; Superfamily II DNA and RNA helicases.
     
 0.757
srtB
Sortase (surface protein transpeptidase).
  
   
 0.526
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.