STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigDDNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)    
Predicted Functional Partners:
ACP32076.1
Hypothetical protein; DNA segregation ATPase FtsK/SpoIIIE and related proteins.
 
 
 
 0.996
sigC
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.872
sigM
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.825
sigH
ECF-family sigma factor H; DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.799
sigB
RNA polymerase sigma factor B; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
  
 0.792
sigK
ECF-family sigma factor K; DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.671
ACP32598.1
Hypothetical protein.
  
 
 0.580
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.565
ACP32831.1
Cell wall-associated hydrolases (invasion- associated proteins).
  
    0.561
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.538
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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