Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dacD-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (613 aa)    
Predicted Functional Partners:
pbp4
D-alanyl-D-alanine carboxypeptidase (penicillin- binding protein 4).
     
 0.979
pbp2A
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.975
ftsI
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.968
pbp2B
Cell division protein FtsI/penicillin-binding protein 2.
 
  
 0.781
pbp1A
Membrane carboxypeptidase (penicillin-binding protein).
 
  
 0.767
pbp1B
Membrane carboxypeptidase (penicillin-binding protein).
 
  
 0.736
ACP32131.1
Hypothetical protein.
 
     0.656
ACP32132.1
Putative secreted protein; Cell wall-associated hydrolases (invasion- associated proteins).
 
   
 0.632
cwlM
Putative hydrolase; N-acetylmuramoyl-L-alanine amidase.
 
  
 0.574
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
    0.523
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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