Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACP32131.1 | ACP32132.1 | cauri_0534 | cauri_0535 | Hypothetical protein. | Putative secreted protein; Cell wall-associated hydrolases (invasion- associated proteins). | 0.837 |
ACP32131.1 | cwlM | cauri_0534 | cauri_2532 | Hypothetical protein. | Putative hydrolase; N-acetylmuramoyl-L-alanine amidase. | 0.673 |
ACP32131.1 | dac | cauri_0534 | cauri_0533 | Hypothetical protein. | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | 0.677 |
ACP32131.1 | pbp2B | cauri_0534 | cauri_1549 | Hypothetical protein. | Cell division protein FtsI/penicillin-binding protein 2. | 0.527 |
ACP32131.1 | upp | cauri_0534 | cauri_0537 | Hypothetical protein. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.699 |
ACP32132.1 | ACP32131.1 | cauri_0535 | cauri_0534 | Putative secreted protein; Cell wall-associated hydrolases (invasion- associated proteins). | Hypothetical protein. | 0.837 |
ACP32132.1 | dac | cauri_0535 | cauri_0533 | Putative secreted protein; Cell wall-associated hydrolases (invasion- associated proteins). | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | 0.657 |
ACP32132.1 | upp | cauri_0535 | cauri_0537 | Putative secreted protein; Cell wall-associated hydrolases (invasion- associated proteins). | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.704 |
cwlM | ACP32131.1 | cauri_2532 | cauri_0534 | Putative hydrolase; N-acetylmuramoyl-L-alanine amidase. | Hypothetical protein. | 0.673 |
cwlM | dac | cauri_2532 | cauri_0533 | Putative hydrolase; N-acetylmuramoyl-L-alanine amidase. | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | 0.508 |
cwlM | ftsI | cauri_2532 | cauri_1673 | Putative hydrolase; N-acetylmuramoyl-L-alanine amidase. | Cell division protein FtsI/penicillin-binding protein 2. | 0.427 |
dac | ACP32131.1 | cauri_0533 | cauri_0534 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Hypothetical protein. | 0.677 |
dac | ACP32132.1 | cauri_0533 | cauri_0535 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Putative secreted protein; Cell wall-associated hydrolases (invasion- associated proteins). | 0.657 |
dac | cwlM | cauri_0533 | cauri_2532 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Putative hydrolase; N-acetylmuramoyl-L-alanine amidase. | 0.508 |
dac | ftsI | cauri_0533 | cauri_1673 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Cell division protein FtsI/penicillin-binding protein 2. | 0.487 |
dac | pbp1A | cauri_0533 | cauri_2443 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Membrane carboxypeptidase (penicillin-binding protein). | 0.685 |
dac | pbp1B | cauri_0533 | cauri_0201 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Membrane carboxypeptidase (penicillin-binding protein). | 0.695 |
dac | pbp2A | cauri_0533 | cauri_0031 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Cell division protein FtsI/penicillin-binding protein 2. | 0.687 |
dac | pbp2B | cauri_0533 | cauri_1549 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Cell division protein FtsI/penicillin-binding protein 2. | 0.741 |
dac | pbp4 | cauri_0533 | cauri_2247 | D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | D-alanyl-D-alanine carboxypeptidase (penicillin- binding protein 4). | 0.989 |
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