Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpfAResuscitation-promoting factor RpfA. (220 aa)    
Predicted Functional Partners:
mptB
Alpha mannopyranosyltransferase.
  
     0.524
ACP32805.1
ABC-type multidrug transport system permease component.
  
     0.520
ACP32253.1
Hypothetical protein.
  
     0.511
mptA
Alpha mannopyranosyltransferase.
  
     0.489
ACP31609.1
Putative membrane protein.
   
    0.459
ACP32727.1
Putative secreted protein.
   
    0.459
cwlM
Putative hydrolase; N-acetylmuramoyl-L-alanine amidase.
 
  
 0.445
ACP33103.1
Uncharacterized protein conserved in bacteria.
  
     0.436
ACP33624.1
Hypothetical protein.
  
     0.433
ACP33287.1
Putative secreted protein; Cell wall-associated hydrolases (invasion- associated proteins).
   
 
 0.417
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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