Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rpfBResuscitation-promoting factor RpfB; Uncharacterized protein conserved in bacteria. (382 aa)    
Predicted Functional Partners:
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.946
ispE
4-diphosphocytidyl-2-C-methyl-D- erythritolkinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.818
tatD
Putative deoxyribonuclease; Mg-dependent DNase.
     
 0.756
ACP32831.1
Cell wall-associated hydrolases (invasion- associated proteins).
  
  
 0.532
ctaC
Heme/copper-type cytochrome/quinol oxidases subunit 2.
      
 0.491
cwlM
Putative hydrolase; N-acetylmuramoyl-L-alanine amidase.
  
   
 0.461
ACP32253.1
Hypothetical protein.
  
     0.438
ACP32671.1
Putative membrane protein.
  
     0.411
ACP32132.1
Putative secreted protein; Cell wall-associated hydrolases (invasion- associated proteins).
   
  
 0.407
ACP32805.1
ABC-type multidrug transport system permease component.
  
     0.407
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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