Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACP32607.1 | ACP32609.1 | cauri_1010 | cauri_1012 | Hypothetical protein. | Hypothetical protein. | 0.668 |
ACP32607.1 | ACP32610.1 | cauri_1010 | cauri_1013 | Hypothetical protein. | Putative membrane protein. | 0.521 |
ACP32607.1 | lipT | cauri_1010 | cauri_1011 | Hypothetical protein. | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | 0.693 |
ACP32609.1 | ACP32607.1 | cauri_1012 | cauri_1010 | Hypothetical protein. | Hypothetical protein. | 0.668 |
ACP32609.1 | ACP32610.1 | cauri_1012 | cauri_1013 | Hypothetical protein. | Putative membrane protein. | 0.722 |
ACP32609.1 | lipT | cauri_1012 | cauri_1011 | Hypothetical protein. | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | 0.805 |
ACP32610.1 | ACP32607.1 | cauri_1013 | cauri_1010 | Putative membrane protein. | Hypothetical protein. | 0.521 |
ACP32610.1 | ACP32609.1 | cauri_1013 | cauri_1012 | Putative membrane protein. | Hypothetical protein. | 0.722 |
ACP32610.1 | lipT | cauri_1013 | cauri_1011 | Putative membrane protein. | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | 0.627 |
ACP33815.1 | lipT | cauri_2224 | cauri_1011 | Putative secretory lipase. | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | 0.802 |
gmk | lipT | cauri_1182 | cauri_1011 | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | 0.537 |
hrpB | lipT | cauri_0084 | cauri_1011 | Putative ATP-dependent helicase; HrpA-like helicases. | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | 0.459 |
hrpB | rnd | cauri_0084 | cauri_1443 | Putative ATP-dependent helicase; HrpA-like helicases. | Ribonuclease D. | 0.851 |
hrpB | rpsD | cauri_0084 | cauri_0444 | Putative ATP-dependent helicase; HrpA-like helicases. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.847 |
hrpB | rpsK | cauri_0084 | cauri_0443 | Putative ATP-dependent helicase; HrpA-like helicases. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.786 |
hrpB | rpsL | cauri_0084 | cauri_0376 | Putative ATP-dependent helicase; HrpA-like helicases. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.578 |
lipT | ACP32607.1 | cauri_1011 | cauri_1010 | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | Hypothetical protein. | 0.693 |
lipT | ACP32609.1 | cauri_1011 | cauri_1012 | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | Hypothetical protein. | 0.805 |
lipT | ACP32610.1 | cauri_1011 | cauri_1013 | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | Putative membrane protein. | 0.627 |
lipT | ACP33815.1 | cauri_1011 | cauri_2224 | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | Putative secretory lipase. | 0.802 |
page 1 of 3