Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dcuBAnaerobic C4-dicarboxylate transporter. (461 aa)    
Predicted Functional Partners:
yhcL
C4-dicarboxylate transporter.
  
   
 0.682
cmk1
Cytidylate kinase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.532
cmk2
Cytidylate kinase.
       0.512
ACP32915.1
16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.
       0.511
ACP32061.1
Putative membrane protein; Predicted permease.
  
     0.505
tdcC2
Threonine/serine transporter; Amino acid permeases.
  
  
 0.490
ACP32464.1
Putative transporter protein; Predicted permease.
  
     0.488
sdaC
Threonine/serine transporter; Amino acid permeases.
  
  
 0.466
tdcC1
Threonine/serine transporter; Amino acid permeases.
  
  
 0.460
ACP32710.1
Putative transporter protein; Predicted permease.
  
     0.454
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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