STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tetRTranscriptional regulator, TetR family; Transcriptional regulator. (206 aa)    
Predicted Functional Partners:
glgX
Putative glycogen debranching enzyme; Type II secretory pathway pullulanase PulA and related glycosidases; Belongs to the glycosyl hydrolase 13 family.
       0.820
ACP33224.1
Hypothetical protein.
       0.718
ACP33226.1
Hypothetical protein.
       0.706
ACP33221.1
Putative secreted protein.
  
    0.687
ACP33227.1
Uncharacterized protein conserved in bacteria.
       0.635
accBC1
Acetyl/propionyl-CoA carboxylase alpha subunit.
    
 
 0.586
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
   
 0.574
ACP33220.1
Putative membrane protein.
       0.567
ACP33225.1
Hypothetical protein.
       0.560
fadD1
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
      
 0.509
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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