Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACP31807.1 | ACP33336.1 | cauri_0208 | cauri_1743 | Putative NUDIX protein; NTP pyrophosphohydrolases including oxidative damage repair enzymes. | Exoribonuclease R. | 0.648 |
| ACP31807.1 | rphA | cauri_0208 | cauri_2097 | Putative NUDIX protein; NTP pyrophosphohydrolases including oxidative damage repair enzymes. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.441 |
| ACP32921.1 | ACP33336.1 | cauri_1328 | cauri_1743 | Putative NTP pyrophosphohydrolase. | Exoribonuclease R. | 0.648 |
| ACP32921.1 | rphA | cauri_1328 | cauri_2097 | Putative NTP pyrophosphohydrolase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.441 |
| ACP32949.1 | ACP33336.1 | cauri_1356 | cauri_1743 | rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Exoribonuclease R. | 0.591 |
| ACP32949.1 | rplX | cauri_1356 | cauri_0423 | rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.706 |
| ACP32949.1 | rpsA | cauri_1356 | cauri_1373 | rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein S1. | 0.405 |
| ACP33336.1 | ACP31807.1 | cauri_1743 | cauri_0208 | Exoribonuclease R. | Putative NUDIX protein; NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.648 |
| ACP33336.1 | ACP32921.1 | cauri_1743 | cauri_1328 | Exoribonuclease R. | Putative NTP pyrophosphohydrolase. | 0.648 |
| ACP33336.1 | ACP32949.1 | cauri_1743 | cauri_1356 | Exoribonuclease R. | rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.591 |
| ACP33336.1 | ACP33803.1 | cauri_1743 | cauri_2212 | Exoribonuclease R. | rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.524 |
| ACP33336.1 | ACP33897.1 | cauri_1743 | cauri_2306 | Exoribonuclease R. | rRNA methylases. | 0.524 |
| ACP33336.1 | rnd | cauri_1743 | cauri_1443 | Exoribonuclease R. | Ribonuclease D. | 0.904 |
| ACP33336.1 | rphA | cauri_1743 | cauri_2097 | Exoribonuclease R. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.984 |
| ACP33336.1 | rplJ | cauri_1743 | cauri_0364 | Exoribonuclease R. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.491 |
| ACP33336.1 | rplX | cauri_1743 | cauri_0423 | Exoribonuclease R. | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.504 |
| ACP33336.1 | rpsA | cauri_1743 | cauri_1373 | Exoribonuclease R. | Ribosomal protein S1. | 0.543 |
| ACP33803.1 | ACP33336.1 | cauri_2212 | cauri_1743 | rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Exoribonuclease R. | 0.524 |
| ACP33803.1 | rplX | cauri_2212 | cauri_0423 | rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.706 |
| ACP33803.1 | rpsA | cauri_2212 | cauri_1373 | rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein S1. | 0.405 |
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