STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fadD6Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (640 aa)    
Predicted Functional Partners:
pks13
Polyketide synthase modules and related proteins.
 0.999
ACP33961.1
Putative carbohydrate esterase.
 
   
 0.864
cmtC
Trehalose corynomycolyl transferase C; Predicted esterase.
 
  
 0.797
ACP31646.1
Putative peptide synthase.
   
 0.743
ACP33967.1
Membrane-associated phospholipid phosphatase.
 
 
  0.703
cmtB
Trehalose corynomycolyl transferase B; Predicted esterase.
 
 
   0.696
fadD1
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
   
 0.685
ACP33965.1
Putative membrane protein.
 
   
 0.663
accD
acyl-CoA carboxylase, beta subunit; Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta).
  
 
 0.647
ACP33962.1
Putative secreted protein.
       0.612
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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