Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
pbp1AMembrane carboxypeptidase (penicillin-binding protein). (738 aa)    
Predicted Functional Partners:
pbp2B
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 
 0.924
pbp2A
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 
 0.894
pbp4
D-alanyl-D-alanine carboxypeptidase (penicillin- binding protein 4).
      
 0.845
ACP34033.1
Putative membrane protein.
  
    0.823
ftsI
Cell division protein FtsI/penicillin-binding protein 2.
 
 
 
 0.813
ACP34032.1
Putative membrane protein.
       0.812
dac
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.767
ACP34035.1
Hypothetical protein.
     
 0.765
divIVA
Cell division initiation protein.
   
 
 0.718
ftsW
Bacterial cell division membrane protein; Belongs to the SEDS family.
  
 
 
 0.685
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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