STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspA4Universal stress protein UspA and related nucleotide-binding proteins. (327 aa)    
Predicted Functional Partners:
ACP34035.1
Hypothetical protein.
     
 0.939
ACP34038.1
Putative membrane protein.
       0.830
ACP34036.1
Transcriptional regulator, MarR family; Transcriptional regulators.
 
   
 0.788
ACP32241.1
Hypothetical protein; Regulator of polyketide synthase expression.
 
     0.688
pbp1A
Membrane carboxypeptidase (penicillin-binding protein).
     
 0.687
ACP32242.1
Hypothetical protein; Regulator of polyketide synthase expression.
 
     0.631
ACP34033.1
Putative membrane protein.
       0.531
ACP33173.1
Hypothetical protein; Restriction endonuclease.
  
     0.483
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.483
ACP33111.1
Hypothetical protein; Restriction endonuclease.
  
     0.430
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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