Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP34066.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
ACP32650.1
Putative membrane protein.
 
  
 0.679
ACP34003.1
Putative membrane protein.
  
     0.647
mrr
Mrr restriction system protein; Restriction endonuclease.
 
     0.631
ACP32651.1
Putative membrane protein; Putative multicopper oxidases.
 
  
 0.617
hsdM
Type I restriction-modification system methyltransferase subunit.
       0.552
ACP34064.1
Hypothetical protein; Restriction endonuclease S subunits.
       0.551
ywjA
ABC-type multidrug transport system ATPase and permease components.
  
     0.538
ACP32646.1
Hypothetical protein; Predicted transcriptional regulator.
  
     0.480
ACP33235.1
Transposase.
  
     0.438
ACP33770.1
Transposase.
  
     0.438
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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