STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hpaLTranscriptional regulators. (220 aa)    
Predicted Functional Partners:
hpaG
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene- 1,7-dioic acid hydratase (catechol pathway).
 
   
 0.977
hpaD
Homoprotocatechuate 2,3-dioxygenase; Lactoylglutathione lyase and related lyases.
 
   
 0.966
hpaE
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
 
     0.822
ACP33247.1
Transcriptional regulators.
  
     0.755
hpaH
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene- 1,7-dioic acid hydratase (catechol pathway).
 
     0.754
ACP34083.1
Transcription regulator, AraC family; AraC-type DNA-binding domain-containing proteins.
  
  
 0.733
gabD2
NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
     
 0.710
hpaX
Putative amino-acid permease; Amino acid transporters.
 
   
 0.705
ACP34094.1
FAD monooxygenase; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
     0.681
ACP34093.1
Proline/betaine transporter; Permeases of the major facilitator superfamily.
       0.669
Your Current Organism:
Corynebacterium aurimucosum
NCBI taxonomy Id: 548476
Other names: C. aurimucosum ATCC 700975, Corynebacterium aurimucosum ATCC 700975, Corynebacterium aurimucosum CCUG 48176, Corynebacterium aurimucosum CIP 107436, Corynebacterium aurimucosum CN-1, Corynebacterium aurimucosum DSM 44827, Corynebacterium aurimucosum str. ATCC 700975, Corynebacterium aurimucosum strain ATCC 700975, Corynebacterium nigricans CN-1
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