STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps16_0Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology. (949 aa)    
Predicted Functional Partners:
PEP5
E3 ubiquitin-protein ligase PEP5.
    
 0.993
VPS3
Vacuolar protein sorting-associated protein 3.
   
 0.991
VPS33_1
Vacuolar protein sorting-associated protein 33; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.990
VPS33_0
Vacuolar protein sorting-associated protein 33; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.990
vam6_1
Vacuolar morphogenesis protein 6.
   
 0.986
vam6_0
Vacuolar morphogenesis protein 6.
   
 0.986
PEP3_1
Vacuolar membrane protein PEP3.
   
 0.985
VPS41_0
Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.
    
 0.985
VPS41_1
Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.
    
 0.985
PEP3_0
Vacuolar membrane protein PEP3.
   
 0.985
Your Current Organism:
Candida viswanathii
NCBI taxonomy Id: 5486
Other names: ATCC 22981, C. viswanathii, CBS 4024, CCRC 21330, CCRC:21330, Candida lodderae, Candida viswanathii Viswanathan & H.S. Randhawa ex R.S. Sandhu & H.S. Randhawa, 2015, DBVPG 6189, IFO 10321, JCM 9567, NRRL Y-6660
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