Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VTS1_0Protein VTS1. (641 aa)    
Predicted Functional Partners:
PUF3
mRNA-binding protein PUF3.
    
 
 0.613
TIF3
Eukaryotic translation initiation factor 4B.
   
 
 0.591
PUF4_1
Pumilio y domain family member 4.
   
 
 0.546
PUF4_0
Pumilio y domain family member 4.
   
 
 0.546
TMA46_1
Translation machinery-associated protein 46.
   
   0.540
TMA46_0
Translation machinery-associated protein 46.
   
   0.540
PAB1_0
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 
 0.528
PAB1_1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 
 0.528
CCR4_3
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 
 0.495
CCR4_1
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 
 0.495
Your Current Organism:
Candida viswanathii
NCBI taxonomy Id: 5486
Other names: ATCC 22981, C. viswanathii, CBS 4024, CCRC 21330, CCRC:21330, Candida lodderae, Candida viswanathii Viswanathan & H.S. Randhawa ex R.S. Sandhu & H.S. Randhawa, 2015, DBVPG 6189, IFO 10321, JCM 9567, NRRL Y-6660
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