STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEG1_1tRNA pseudouridine(38/39) synthase. (442 aa)    
Predicted Functional Partners:
PUS4
tRNA pseudouridine synthase 4.
   
 0.854
CBF5_0
Centromere/microtubule-binding protein CBF5.
   
 0.814
CBF5_1
Centromere/microtubule-binding protein CBF5.
   
 0.814
mrpl8_1
54S ribosomal protein L8, mitochondrial.
  
  
 0.789
mrpl8_0
54S ribosomal protein L8, mitochondrial.
  
  
 0.789
RPC40_1
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.780
rpb3
DNA-directed RNA polymerase II subunit RPB3.
  
  
 0.780
RPC40_0
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.780
NEW1
[NU+] prion formation protein 1.
   
   0.770
Cantr_00671
Uncharacterized protein.
   
   0.751
Your Current Organism:
Candida viswanathii
NCBI taxonomy Id: 5486
Other names: ATCC 22981, C. viswanathii, CBS 4024, CCRC 21330, CCRC:21330, Candida lodderae, Candida viswanathii Viswanathan & H.S. Randhawa ex R.S. Sandhu & H.S. Randhawa, 2015, DBVPG 6189, IFO 10321, JCM 9567, NRRL Y-6660
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.