STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cantr_07251Uncharacterized protein. (94 aa)    
Predicted Functional Partners:
fbp1
Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family.
   
 
  0.599
YJL068C
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
   
 
 0.584
LCBK1
Sphingoid long-chain bases kinase 1.
     
 0.579
LCB5
Sphingoid long chain base kinase 5.
     
 0.579
LCB4
Sphingoid long chain base kinase 4.
     
 0.579
man9_0
Beta-mannosidase B.
    
  0.575
man9_1
Beta-mannosidase B.
    
  0.575
YDL086W_0
Putative carboxymethylenebutenolidase.
     
 0.564
YDL086W_1
Putative carboxymethylenebutenolidase.
     
 0.564
ECI1_2
3,2-trans-enoyl-CoA isomerase.
   
 
 0.548
Your Current Organism:
Candida viswanathii
NCBI taxonomy Id: 5486
Other names: ATCC 22981, C. viswanathii, CBS 4024, CCRC 21330, CCRC:21330, Candida lodderae, Candida viswanathii Viswanathan & H.S. Randhawa ex R.S. Sandhu & H.S. Randhawa, 2015, DBVPG 6189, IFO 10321, JCM 9567, NRRL Y-6660
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