STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyp9Peptidyl-prolyl cis-trans isomerase 9. (512 aa)    
Predicted Functional Partners:
SYF2
Pre-mRNA-splicing factor SYF2.
    
  0.897
MTR4
ATP-dependent RNA helicase DOB1.
   
 0.884
CWC25
Pre-mRNA-splicing factor CWC25.
    
  0.877
CYP10
Peptidyl-prolyl cis-trans isomerase-like 3.
   
 0.846
CWC22_1
Pre-mRNA-splicing factor CWC22.
   
  0.840
CWC22_0
Pre-mRNA-splicing factor CWC22.
   
  0.840
CDC40_0
Pre-mRNA-processing factor 17.
   
  0.830
CDC40_1
Pre-mRNA-processing factor 17.
   
  0.830
SUB2
ATP-dependent RNA helicase SUB2.
    
  0.825
prp16_0
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16.
   
  0.807
Your Current Organism:
Candida viswanathii
NCBI taxonomy Id: 5486
Other names: ATCC 22981, C. viswanathii, CBS 4024, CCRC 21330, CCRC:21330, Candida lodderae, Candida viswanathii Viswanathan & H.S. Randhawa ex R.S. Sandhu & H.S. Randhawa, 2015, DBVPG 6189, IFO 10321, JCM 9567, NRRL Y-6660
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.