STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PODNPodocan. (720 aa)    
Predicted Functional Partners:
HYR3_4
Hyphally regulated cell wall protein 3.
    
 0.926
smd2_0
Small nuclear ribonucleoprotein Sm D2.
    
 0.694
Cantr_06898
Uncharacterized protein.
    
  0.661
SMD3_1
Small nuclear ribonucleoprotein Sm D3.
    
 0.646
IRC6
Increased recombination centers protein 6.
    
 0.646
sme1
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.643
Cantr_00886
Sm domain-containing protein.
    
 0.643
SMB1_0
Small nuclear ribonucleoprotein-associated protein B.
    
 0.642
SMB1_1
Small nuclear ribonucleoprotein-associated protein B.
    
 0.642
SMX2_1
Small nuclear ribonucleoprotein G.
    
  0.638
Your Current Organism:
Candida viswanathii
NCBI taxonomy Id: 5486
Other names: ATCC 22981, C. viswanathii, CBS 4024, CCRC 21330, CCRC:21330, Candida lodderae, Candida viswanathii Viswanathan & H.S. Randhawa ex R.S. Sandhu & H.S. Randhawa, 2015, DBVPG 6189, IFO 10321, JCM 9567, NRRL Y-6660
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.