Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cantr_07183 | RBR3_0 | A0A367XYT3 | A0A367YKV7 | Uncharacterized protein. | Cell wall protein RBR3. | 0.684 |
NGG1_0 | RBR3_0 | A0A367XQE0 | A0A367YKV7 | Chromatin-remodeling complexes subunit NGG1. | Cell wall protein RBR3. | 0.582 |
NGG1_0 | SPT3 | A0A367XQE0 | A0A367YJH2 | Chromatin-remodeling complexes subunit NGG1. | Protein SPT3. | 0.989 |
NGG1_0 | SUS1_0 | A0A367XQE0 | A0A367YFG0 | Chromatin-remodeling complexes subunit NGG1. | Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] | 0.946 |
NGG1_0 | SUS1_1 | A0A367XQE0 | A0A367XW44 | Chromatin-remodeling complexes subunit NGG1. | Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] | 0.946 |
NGG1_0 | TRA1 | A0A367XQE0 | A0A367XVY3 | Chromatin-remodeling complexes subunit NGG1. | Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family. | 0.995 |
NGG1_0 | sgf73 | A0A367XQE0 | A0A367XUF0 | Chromatin-remodeling complexes subunit NGG1. | SAGA-associated factor 73. | 0.993 |
RBR3_0 | Cantr_07183 | A0A367YKV7 | A0A367XYT3 | Cell wall protein RBR3. | Uncharacterized protein. | 0.684 |
RBR3_0 | NGG1_0 | A0A367YKV7 | A0A367XQE0 | Cell wall protein RBR3. | Chromatin-remodeling complexes subunit NGG1. | 0.582 |
RBR3_0 | RGA1 | A0A367YKV7 | A0A367XZE9 | Cell wall protein RBR3. | Rho-type GTPase-activating protein 1. | 0.658 |
RBR3_0 | SPT3 | A0A367YKV7 | A0A367YJH2 | Cell wall protein RBR3. | Protein SPT3. | 0.712 |
RBR3_0 | STE2_0 | A0A367YKV7 | A0A367XZL6 | Cell wall protein RBR3. | Pheromone alpha factor receptor. | 0.592 |
RBR3_0 | STE2_1 | A0A367YKV7 | A0A367YBC9 | Cell wall protein RBR3. | Pheromone alpha factor receptor. | 0.592 |
RBR3_0 | SUS1_0 | A0A367YKV7 | A0A367YFG0 | Cell wall protein RBR3. | Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] | 0.610 |
RBR3_0 | SUS1_1 | A0A367YKV7 | A0A367XW44 | Cell wall protein RBR3. | Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] | 0.610 |
RBR3_0 | TRA1 | A0A367YKV7 | A0A367XVY3 | Cell wall protein RBR3. | Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family. | 0.670 |
RBR3_0 | sgf73 | A0A367YKV7 | A0A367XUF0 | Cell wall protein RBR3. | SAGA-associated factor 73. | 0.680 |
RGA1 | RBR3_0 | A0A367XZE9 | A0A367YKV7 | Rho-type GTPase-activating protein 1. | Cell wall protein RBR3. | 0.658 |
RGA1 | sgf73 | A0A367XZE9 | A0A367XUF0 | Rho-type GTPase-activating protein 1. | SAGA-associated factor 73. | 0.418 |
SPT3 | NGG1_0 | A0A367YJH2 | A0A367XQE0 | Protein SPT3. | Chromatin-remodeling complexes subunit NGG1. | 0.989 |
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