STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HFM1_0ATP-dependent DNA helicase MER3. (1222 aa)    
Predicted Functional Partners:
PRP8_1
Pre-mRNA-splicing factor 8.
   
 0.945
PRP8_0
Pre-mRNA-splicing factor 8.
   
 0.945
DIB1
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.939
smd2_0
Small nuclear ribonucleoprotein Sm D2.
   
 0.935
SNU66
U4/U6.U5 small nuclear ribonucleoprotein component.
   
 0.927
PRP6_0
Pre-mRNA-splicing factor 6.
   
 0.921
PRP6_1
Pre-mRNA-splicing factor 6.
   
 0.921
Cantr_01764
WD_REPEATS_REGION domain-containing protein.
    
 0.917
lsm7_0
U6 snRNA-associated Sm-like protein LSm7.
    
 0.891
lsm4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.889
Your Current Organism:
Candida viswanathii
NCBI taxonomy Id: 5486
Other names: ATCC 22981, C. viswanathii, CBS 4024, CCRC 21330, CCRC:21330, Candida lodderae, Candida viswanathii Viswanathan & H.S. Randhawa ex R.S. Sandhu & H.S. Randhawa, 2015, DBVPG 6189, IFO 10321, JCM 9567, NRRL Y-6660
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.