STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tdh_3Zn-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)    
Predicted Functional Partners:
por_2
Fructuronate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.
    
 0.941
uxaC_1
Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.903
tdh_2
Galactonate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.837
sgbE
L-ribulose-5-phosphate 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.802
rspA
Bifunctional D-altronate/D-mannonate dehydratase; Starvation-sensing protein; maybe involved in homoserine lactone degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.786
adh
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.637
garP
Hexuronate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.550
yahK_2
Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.460
kbl_1
Glycine C-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.432
yegS
Lipid kinase YegS; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the diacylglycerol/lipid kinase family. YegS lipid kinase subfamily.
       0.430
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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