STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apxIB_1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (715 aa)    
Predicted Functional Partners:
prsE
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.986
bepC
Type I secretion system outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.957
BEE12_09725
Transcription antiterminator BglG; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.936
AOE40100.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.906
metN_1
D-methionine ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.833
AOE40101.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.826
AOE40102.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.806
AOE38577.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.793
AOE38578.1
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.765
pstB
Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.747
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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