STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOE39007.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (790 aa)    
Predicted Functional Partners:
tonB_2
TonB system transport protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.856
AOE39006.1
Hemin transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.825
AOE39003.1
Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.805
AOE39005.1
Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.801
AOE40992.1
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.713
AOE41242.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 
 0.698
AOE39004.1
Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.685
AOE41610.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.670
AOE41066.1
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
AOE40102.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 
 0.659
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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