STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhjK_1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (693 aa)    
Predicted Functional Partners:
arcB
Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
adrA_1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.971
cheV
Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.941
csrD
RNase E specificity factor CsrD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.926
gmr_4
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.909
bdlA_1
3',5'-cyclic-nucleotide phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.871
gmr_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.845
rcsC_2
Two-component system sensor histidine kinase/response regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
  
 0.828
motA
Flagellar motor stator protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.801
AOE41082.1
Pili assembly chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.800
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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