Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yccS_1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (691 aa)    
Predicted Functional Partners:
ycdY
Histidinol-phosphatase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
ampE
Regulatory signaling modulator protein AmpE; Involved in regulation of beta-lactamase; putative signaling protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
AOE41872.1
Pilus assembly protein HofM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.739
yeeA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
lpoA
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.675
thiK
Thiamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
aaeB_5
Fusaric acid resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.642
AOE41925.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.641
yhjJ_2
Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.637
chaA
Sodium-potassium/proton antiporter ChaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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